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no replicates
•
reset
0
votes
0
replies
1.1k
views
MethylSig is not giving DMRs with no replicates
methylsig
no replicates
dmr
7.6 years ago
nilaycan
• 0
1
vote
5
replies
4.0k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
Tony
• 0
4
votes
9
replies
12k
views
DESeq2, no replicate
deseq2
no replicates
high p-adj values
updated 3.6 years ago by
Michael Love
43k • written 8.4 years ago by
Mahtetie
• 0
4
votes
8
replies
2.9k
views
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
rnaseq
edger
DGE
no replicates
8.5 years ago
Stefany Solano
• 0
2
votes
1
reply
1.7k
views
diffHiC with no biological replicates?
diffhic
estimate dispersion value
glm
no replicates
deseq
updated 8.9 years ago by
Aaron Lun
★ 29k • written 8.9 years ago by
hwick1
▴ 20
5
votes
7
replies
5.8k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
8.9 years ago
BioinfGuru
▴ 70
6 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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